Best Payroll Software for Small Business 2026

Compare Gusto, Patriot, OnPay, Homebase and QuickBooks for 2-25 employees, with August 2026 pricing. Most SMBs pay $100-200/month and use under 10% of it.

Verified 2026-08-02 Jump to comparison ↓

Is it right for you?

  • Confirm the software handles your state's payroll taxes
  • Check direct deposit timing (next-day vs 2-4 days)
  • Verify W-2 and 1099 filing is included, not an add-on
  • Test the employee self-service portal before committing
  • Ask about contractor payment support if relevant
  • Confirm integration with your accounting software (QuickBooks, Xero)
  • Check customer support hours: payroll errors need fast resolution
  • Understand the annual vs monthly contract difference

Quick verdict

TL;DR: For most small businesses (2-25 employees), Gusto Simple ($49/mo + $6/employee, up from $40 after a 2026 price hike that frustrated existing customers) is the easiest to get started. On a tight budget, Patriot Payroll ($17/mo + $4/employee for Basic, $37/mo + $5/employee for Full Service with tax filing) is the cheapest full-service option and the one small business owners on Reddit recommend most often when Gusto or ADP feel too expensive. Restaurants and hourly workers do best with OnPay or Homebase, both of which handle tip allocation and shift-based pay natively. If you want HR, payroll, and benefits in one system, Gusto Plus or Rippling cover that, though Rippling's real cost runs well above its advertised $8/employee headline rate once you add the modules that make it function as payroll.

What to look for in small business payroll software

“Gusto has definitely gotten too big for their britches. They are losing a lot of the charm and advantages they once had over competitors”

A Reddit commenter in r/Payroll (2026)

Gusto logoGusto
Patriot Payroll logoPatriot
OnPay logoOnPay
Rippling logoRippling
QuickBooks Payroll logoQuickBooks
ADP RUN logoADP RUN
Paychex Flex logoPaychex

Small business payroll needs differ from enterprise needs in three important ways: (1) the owner or a non-specialist often runs payroll, so the interface needs to be genuinely simple; (2) errors are more costly, a 5-person team cannot absorb a missed payroll the way a 500-person company can; (3) support quality matters more because you don't have an in-house payroll expert to diagnose issues.

The features that matter most for SMBs: automatic federal and state tax calculation and filing, direct deposit for employees, W-2 and 1099 generation at year-end, and basic time-off tracking. Everything beyond that, benefits administration, performance reviews, advanced reporting, can be added later as you scale. If Gusto turns out not to be the right fit, see our Gusto alternatives guide.

Pricing models vary significantly. Some use a flat base fee plus per-employee fee (Gusto, Patriot, OnPay). Others charge per-employee only (no base fee). A few use per-payroll-run pricing. For most small businesses, the base-plus-per-employee model is most predictable.

Gusto: best overall for SMBs

Gusto is the most widely used payroll software for US small businesses, and it earned that position with a genuinely smooth setup experience and a clean interface that non-HR people can navigate without training. The Simple plan covers everything most SMBs need: unlimited payroll runs, direct deposit, automatic tax filing, W-2s and 1099s, employee self-service, and basic onboarding.

The Simple plan runs $49/month plus $6/employee, up from $40/month before a 2026 price change. The Plus plan adds next-day direct deposit, time tracking, PTO policies, and performance reviews, and costs $80/month plus $12/employee.

It works best for US-only teams of 2 to 50 employees where the founder or an ops person runs payroll. Setup takes under an hour for most small businesses.

G2 rating: 4.6/5 across more than 13,000 reviews on Gusto's G2 profiles. The most praised aspect is onboarding and setup simplicity. The recurring criticism: customer support response times have increased as Gusto has scaled, and users on the Simple plan report hitting feature walls (next-day deposit, PTO policies) that require upgrading.

Support quality has declined as Gusto has scaled. Phone support wait times can be long. If you are moving from another provider mid-year, budget time for data migration: it is not always smooth. The 2026 Simple plan price increase, a 23% jump with about a month's notice, also drew real frustration: a thread in r/Payroll from small business owners and accountants described switching clients to ADP or Paychex over it, and one commenter said flatly that "Gusto has definitely gotten too big for their britches" and is "losing a lot of the charm and advantages they once had over competitors" [r/Payroll, 2026]. A separate commenter in the same discussion cited a tax filing error as the reason they moved a client off Gusto entirely. Neither complaint means Gusto is unreliable for most small businesses, but budget for the possibility of another increase and confirm your filings each quarter rather than assuming autopilot is error-free.

Patriot Payroll: best for tight budgets

Patriot Payroll offers the lowest price among full-service payroll tools: $17/month base plus $4/employee/month for the Basic plan (tax filing is on you), or $37/month plus $5/employee for Full Service, which adds automatic federal and state tax filing. For a 5-person team, that's $37/month on Basic or $62/month on Full Service, still well under Gusto Simple's $49 + $6/employee.

It works best for very small businesses (2 to 15 employees) with straightforward payroll: mostly salaried or hourly W-2 employees, single-state, no complex scenarios. If the owner runs payroll personally and wants the lowest possible cost, Patriot is the answer.

Patriot consistently earns the G2 "Best Value" badge in the small business payroll category. Users rate it highly for affordability and US-based support, while noting the dated interface and the 4-day direct deposit window on the basic plan as the two most common trade-offs. A small business owner comparing options in r/smallbusiness in late 2026 confirmed the current pricing directly, listing it as "$37 + $5 per month service" while weighing it against Gusto for a solo S-corp payroll setup, which matches Patriot's published Full Service rate [r/smallbusiness, 2026].

The interface is functional but dated, with no mobile admin app. The HR add-on is basic. Customer support is US-based and responsive, but the product has not kept pace with UX improvements at Gusto or Rippling.

OnPay: best for restaurants and nonprofits

OnPay charges $49/month + $6/employee and includes multi-state payroll, tip management, agricultural payroll, and nonprofit-specific tax forms at no extra cost. The support team is US-based and consistently rated as more responsive than Gusto's (see Gusto vs OnPay for a direct feature comparison), a meaningful advantage when you hit a payroll problem on Friday afternoon.

It fits restaurants, food service operations, nonprofits, farms, and businesses with complex pay structures like tips, piece-rate pay, or multiple pay rates. OnPay handles these natively where Gusto would require manual workarounds. That matters because tip allocation is a real gap in some scheduling-first tools: a two-location cafe owner posting in r/smallbusiness described using Homebase and still spending roughly an hour per store, per day, manually splitting credit-card tips by the minute whenever shifts overlapped, because the gratuity payout was not automatically linked to hours worked [r/smallbusiness, 2026]. That is precisely the workflow OnPay's native FICA tip credit and gratuity handling is built to remove, so if tip math is your main pain point, weigh that against Homebase before committing.

The HR feature set is lighter than Gusto Plus: no performance review tools and limited onboarding automation. For a full HR platform, pair OnPay with BambooHR or step up to Gusto Plus.

Homebase vs Gusto: which wins for hourly, shift-based teams

For restaurants, retail, and hospitality businesses with shift workers, the real comparison is not Gusto vs. OnPay, it is Gusto vs. Homebase. Homebase started as scheduling software for hourly teams and later added payroll as an add-on at $39/month plus $6 per employee paid, on top of whichever Homebase base plan you are on. Gusto Simple is $49/month plus $6 per employee. Because both charge the same $6 per head, the per-employee side cancels out entirely and the comparison collapses to base fees, which is the opposite of the "flat rate that gets better as you grow" story Homebase is usually sold on.

The math turns on Homebase's free Basic plan, which covers 1 location and up to 10 employees. Under that ceiling a 10-person team pays $0 base plan + $39 + $60 = $99/month against Gusto Simple's $109. Cross it and you need Essentials at $30/month per location, so 25 employees is $30 + $39 + $150 = $219 against Gusto's $199. The crossover sits almost exactly at 10 employees and one location, and multi-location makes it worse because Essentials bills per location. If you are a 20-person two-location operation, Homebase is the more expensive option on payroll alone.

So the case for Homebase rests on the workflow rather than the bill. Managers build the schedule, employees clock in via the free mobile app or a tablet, and hours flow directly into payroll with no manual entry. Gusto has no scheduling or shift-management feature at all, so if scheduling matters you end up running Homebase or Deputy alongside Gusto anyway. Price that stack out and Homebase does still win on cost, just narrowly: Gusto Simple plus Homebase Essentials for scheduling comes to $79 + $6 per employee, against $69 + $6 all-in on Homebase. That is ten dollars a month and one fewer integration to keep working, which is a real reason to choose it but a much smaller one than the flat-rate framing suggests.

Gusto wins back the decision for office-based or remote teams where HR depth matters more than scheduling: full benefits administration (health, dental, vision, 401k), digital onboarding with offer letters and I-9 collection, and multi-state compliance tooling that Homebase does not attempt to match. If your team is primarily salaried and does not clock in and out by shift, Gusto's HR features are the better fit despite the higher per-employee cost.

Rippling Payroll - best for scaling SMBs

Rippling earns its keep once a small business stops being purely a payroll problem and starts being an operations problem. The platform bolts payroll onto a unified employee system of record, so the same record that runs a paycheck also provisions a laptop, assigns a Google Workspace seat, and tracks PTO. For a 30-person company adding five hires a quarter, that single source of truth removes the double-entry that breaks payroll accuracy as headcount climbs.

Pricing starts around $8 per employee per month for the core platform, but that figure is misleading because Rippling sells modules. Payroll, benefits administration, device management, and the app store each carry their own per-employee fee, and there is a platform base cost layered on top. A realistic all-in number for payroll plus benefits lands closer to $35-$45 per employee per month once you add the pieces most growing teams actually want. Rippling rarely publishes flat quotes, so expect a sales call.

Where Rippling pulls ahead of Gusto and OnPay is multi-state and approaching-enterprise complexity. It handles automatic tax registration in new states, syncs headcount-based benefits eligibility, and runs approval workflows that matter once you have managers approving their own teams' hours. For a business with employees in six states and a mix of salaried and hourly staff, that automation prevents the compliance gaps that manual systems create.

The tradeoff is cost and overhead. Rippling carries a G2 score of 4.8 out of 5 across more than 6,000 reviews, but the modular pricing and implementation effort make it overkill for a five-person shop. If you are under 10 employees in one state, Gusto or Patriot will serve you better and cheaper. Rippling is the answer when payroll is one node in a growing HR and IT stack, not the whole job.

QuickBooks Payroll - best for QuickBooks Online users

If your books already live in QuickBooks Online, QuickBooks Payroll is the path of least resistance. The payroll runs post directly into your general ledger with correct expense and liability accounts, no CSV exports, no manual journal entries, and no reconciliation drift between two systems. For the millions of US small businesses whose accountant already works in QBO, that native sync is worth more than any single feature on a competitor's list.

QuickBooks sells three tiers, and Intuit renamed all three in 2026: Payroll Core, Premium and Elite are now Workforce Payroll, Workforce Premium and Workforce Elite. Base prices held steady in the 1 July 2026 repricing but per-employee rates went up. Workforce Payroll runs $50/month base plus $6.50 per employee, Premium is $88/month plus $10 per employee, and Elite is $134/month plus $12 per employee. Multi-state filing is $12/month per additional state on the first two tiers and included on Elite. Workforce Payroll covers full-service payroll with automated federal and state tax filing and next-day direct deposit. Premium adds same-day direct deposit, HR support, and workers' comp administration. Elite adds a personal HR advisor and a tax penalty protection guarantee up to $25,000, which matters for owners who file in multiple states and worry about getting a deadline wrong.

The honest limitation is that QuickBooks Payroll is best when you are already a QuickBooks shop. As a standalone payroll tool divorced from QBO, it is competent but unremarkable, and the per-employee math gets expensive fast for hourly-heavy teams compared to Patriot or OnPay. The benefits marketplace is also thinner than Gusto's, so businesses building a competitive benefits package may feel boxed in.

QuickBooks Online Payroll holds a G2 score near 4.0 out of 5, lower than Gusto or Rippling, with reviewers citing support wait times as the main complaint. But the rating undersells the practical value for the target user. If your accountant lives in QuickBooks and your priority is clean books over a slick HR portal, the integration alone justifies the choice.

ADP RUN and Paychex Flex - best full-service for hands-off owners

ADP RUN and Paychex Flex are the legacy heavyweights, and they win for owners who want to hand payroll off entirely and never think about a tax deadline again. Both pair software with a named human, a service model the newer SaaS tools largely automate away. For a business owner running a busy restaurant or contracting firm who treats payroll as a chore to delegate rather than a system to operate, that white-glove handling is the selling point.

Neither vendor publishes transparent pricing, which is itself a signal. Real-world quotes for ADP RUN typically land around $50-$80 base per pay period plus $4-$6 per employee, and because ADP bills per pay run, weekly payroll multiplies the cost versus the monthly billing Gusto and OnPay use. Paychex Flex sits in a similar range, often $39-$60 base plus a per-employee fee, with setup and year-end W-2 fees that sometimes appear as add-ons. Always ask for the all-in annual number before signing.

The strength is depth of compliance and scale. Both handle complex multi-state filing, garnishments, certified payroll for government contractors, and dedicated retirement and benefits administration that smaller tools outsource or skip. For a 40-employee business spanning several states with union or prevailing-wage requirements, ADP and Paychex have the infrastructure that a leaner tool cannot match.

The drawbacks are cost opacity and contract friction. ADP RUN scores around 4.5 and Paychex Flex around 4.2 on G2, respectable but trailing Gusto and Rippling, with reviewers flagging surprise fees and aggressive upsells. For a sub-15-person team in one or two states, these two are expensive overkill. They earn their price when complexity and the value of a phone-a-human safety net outweigh the premium.

How to choose: a decision framework by employee count, states, and contractor mix

The fastest way to narrow six tools to one is to score your business on three axes: employee count, number of states, and your W-2 versus 1099 mix. These three variables drive both your compliance burden and your monthly cost more than any feature checklist, and they map cleanly onto the tools above.

Employee count is the first filter. Under 10 employees in a single state, lean toward Patriot (roughly $37/month base plus $5 per employee for full-service tax filing) or Gusto Simple at $49/month plus $6 per employee. Between 10 and 30 employees, Gusto and OnPay ($49/month plus $6 per employee) hit the sweet spot of price and capability. Above 30 and growing fast, Rippling or QuickBooks Premium start paying for themselves through automation, and at 40-plus with real complexity, ADP RUN or Paychex enter the conversation.

Number of states is the second filter. One state keeps every tool on the table. Two or three states means you need automated multi-state tax filing as standard, which Gusto, OnPay, and QuickBooks all handle well. Four or more states, especially with employees triggering new tax registrations, pushes you toward Rippling's automatic state registration or the full-service handling of ADP and Paychex, because manual registration across many states is where small businesses incur penalties.

Contractor mix is the third. If you are mostly 1099 contractors, you do not need a heavyweight W-2 engine. Gusto and OnPay both run contractor-only payroll cheaply and file 1099s, and Gusto offers a contractor-only plan at $35/month base. A heavy W-2 team with benefits enrollment rewards Gusto's benefits marketplace or Rippling's unified eligibility tracking instead. Score yourself on all three axes, take the tool that appears most often, and you will rarely pick wrong. When two tools tie, default to the cheaper one and the G2 scores in the next section will break the tie.

How to choose by business type: restaurants, salaried offices, and multi-state teams

The employee-count-and-states framework above works, but most owners actually think in terms of what kind of business they run first. Here is the same decision mapped to three common small business shapes.

Restaurants, cafes, and hourly/tipped teams. The two things that break generic payroll for this group are gratuity allocation and shift-based pay rates. OnPay and Homebase both handle tip credits and multi-rate hourly pay natively, which matters more than it sounds: owners who try to run tipped payroll through a tool built for salaried teams end up doing the gratuity math by hand, which is exactly the "an hour per store, per day" problem a cafe owner described on r/smallbusiness when using a tool without automated gratuity allocation [r/smallbusiness, 2026]. If you run one or two locations with hourly staff, start with OnPay ($49/month + $6/employee) for the payroll side and Homebase if you also need shift scheduling and time clocks.

Salaried office teams, single state. This is the easiest case and the one where price matters most, since there is no tip math, minimal overtime complexity, and usually one set of state tax rules. Patriot Full Service ($37/month + $5/employee) or Gusto Simple ($49/month + $6/employee) both cover this cleanly. Choose Patriot if the owner runs payroll personally and wants the lowest bill; choose Gusto if you want a nicer interface, a benefits marketplace for when you add insurance, and do not mind paying more for it.

Multi-state or distributed teams. Once a second employee works from a different state, you need automated multi-state withholding and, eventually, state registration help. Gusto Plus ($80/month + $12/employee) and OnPay (multi-state included at no extra charge) both handle the filing side well. Above roughly 30 employees or four-plus states, Rippling's automatic state tax registration starts to earn its higher price, but budget for a realistic $25-45 per employee per month once payroll, benefits, and any HR modules are added, not the $8 headline rate.

Real complaints from actual users: what review sites and Reddit threads say

Marketing pages describe these tools the way vendors want you to see them. The complaints below come from actual small business owners, bookkeepers, and accountants comparing options in public forums, which is a better signal for what breaks in practice.

Gusto's 2026 price increase caught long-time customers off guard. On 1 March 2026 Gusto raised the Simple plan from $40 + $6/employee to $49 + $6/employee, a roughly 23% jump on the base fee, and gave existing customers about a month's notice. A thread in r/Payroll filled up with accountants and owners saying they were moving clients to ADP or Paychex over it; one commenter summed up the sentiment bluntly: "Gusto has definitely gotten too big for their britches. They are losing a lot of the charm and advantages they once had over competitors" [r/Payroll, 2026]. A separate commenter in the same thread said a Gusto filing error, not the price, was what actually pushed them to switch a client to ADP. Neither complaint is universal, most Gusto users do not report filing errors, but it is worth confirming your own filings each quarter rather than assuming autopilot payroll is hands-off forever.

Rippling's modular pricing can bill you for headcount you no longer have. The recurring theme across independent reviews of Rippling is that the advertised $8/employee rate is real but incomplete: payroll, benefits, and IT modules each carry their own per-employee fee, so a company that starts with core HR and adds payroll, benefits, and device management can see its bill triple. Some users have reported being billed for employee counts that did not reflect recent headcount reductions, which is a real budgeting risk for a small business that laid off or lost staff mid-contract. Confirm how Rippling handles seat reconciliation before signing, not after the first invoice.

Patriot Payroll's pricing checks out, and its support gets specific praise. Owners comparing options directly on r/smallbusiness confirm Patriot's current Full Service rate of $37/month plus $5/employee matches what Patriot actually charges [r/smallbusiness, 2026], which is reassuring given how often payroll pricing pages go stale. The tradeoffs mentioned most often are the dated interface and the standard 4-day direct deposit window on lower tiers, not billing surprises.

Homebase is strong for scheduling but weak for tip payroll math. A restaurant and cafe owner walking through their payroll process on r/smallbusiness described spending about an hour per location, per day, manually reconciling credit-card tips against shift times on Homebase, because gratuity was not automatically linked to hours worked when shifts overlapped [r/smallbusiness, 2026]. If tip allocation is your main headache, OnPay's native FICA tip credit handling is the more direct fix.

OnPay and Patriot both get consistently praised for support responsiveness across G2, Capterra, and forum threads, in contrast to Gusto and ADP, where scaling has visibly slowed response times according to reviewers. If fast, US-based human support when payroll breaks on a Friday afternoon is your top priority, weight that over feature checklists.

Real pricing and G2 scores for all 6 tools

Pricing pages bury the numbers that actually decide your annual cost, so here is every tool side by side: published base price, per-employee add-on, who it fits, and the current G2 community score. For a 15-employee team, multiply the per-employee figure by 15 and add the base to get a realistic monthly estimate before benefits or add-on modules.

ToolBase price (entry tier)Per employee / moBest forG2 score
Patriot Payroll$17/mo (Basic, self-file) / $37/mo (Full Service)$4 (Basic) / $5 (Full Service)Budget-conscious teams under 10, single state4.8 / 5
OnPay$49/mo$6Restaurants, nonprofits, contractor-heavy teams4.8 / 5
Gusto$49/mo (Simple)$6All-around SMB pick, strong benefits marketplace4.6 / 5
Rippling~$8/employee platform + modules$35-$45 all-inFast-scaling, multi-state, payroll + HR + IT4.8 / 5
QuickBooks Payroll$50/mo (Workforce Payroll)$6.50Businesses already on QuickBooks Online4.0 / 5
ADP RUN~$50-$80 / pay period$4-$6Hands-off owners wanting full-service support4.5 / 5

Monthly cost for a 15-employee team$112Patriot(Full Service)$37 + $5/employee$139Gusto(Simple)$49 + $6/employee$139OnPay$49 + $6/employee$148QuickBooks(Workforce)$50 + $6.50/employee$205ADP RUNtypical, custom quote$600Ripplingall-in with modules

A few caveats the table cannot hold. Rippling and ADP do not publish flat rates, so the figures above are typical real-world quotes, not list prices, and both require a sales conversation. ADP bills per pay run rather than per month, so weekly payroll roughly doubles the effective base cost versus a monthly biller like Gusto. And every tool here charges for higher tiers that add HR tools, same-day direct deposit, or dedicated support, so the entry price is a floor, not your final number.

Read the G2 scores as tiebreakers, not gospel. Patriot, OnPay, and Rippling all sit at 4.8, but they win that score for opposite reasons: Patriot for value, OnPay for service, Rippling for breadth. QuickBooks' 4.0 reflects support complaints, not a broken product, and it still wins outright for QBO users on integration alone. Match the tool to your employee count, state footprint, and contractor mix from the framework above, then use these numbers to confirm you are not overpaying for capability you will never use.

Best Payroll software for small business by use case

Not every small business has the same payroll needs, so a one-size-fits-all recommendation rarely helps. The picks below are organized by the situation that fits most small business owners, so you can skip straight to the option that matches your setup.

Best for the tightest budget: Patriot Payroll Basic starts at $17/month plus $4 per employee, the cheapest option on this list, though you file federal and state payroll taxes yourself at that tier. Step up to Full Service at $37/month plus $5 per employee and Patriot files everything in all 50 states for you; either way you get unlimited payroll runs and a 30-day free trial. Best for businesses already on QuickBooks: QuickBooks Workforce Payroll (formerly Payroll Core) at $50/month plus $6.50 per employee syncs directly with your existing books and cuts out manual data entry. Best overall for growing teams: Gusto Simple at $49/month plus $6 per employee offers AutoPilot payroll, 180-plus integrations, and sits at 4.6/5 on G2 (G2 rates products, not individual plan tiers, so treat that as a score for Gusto overall rather than for Simple specifically). It ranked number one on G2's Contractor Payments Index in Spring 2026.

Best for scaling businesses: ADP RUN uses custom pricing but earned the number one G2 Small Business rating in 2026. It adds AI-driven error detection and strong multi-state compliance tools as your headcount grows. Best for all-in pricing with no upsells: OnPay charges $49/month plus $6 per employee and includes every feature at that one price, with a one-month free trial. Best for multi-state payroll: Gusto Plus at $80/month plus $12 per employee adds next-day direct deposit and covers employees in multiple states without upgrading to an enterprise plan.

Pricing comparison: what small businesses actually pay in 2026

Payroll software pricing works on a base fee plus a per-employee fee every month. The base fee covers the platform access and tax filing infrastructure. The per-employee fee scales with your headcount. One detail that catches small business owners off guard is the difference between unlimited payroll runs and per-run pricing.

Gusto, OnPay, Patriot, and QuickBooks all let you run payroll as many times per month as you need for no extra charge. Paychex charges a fee each time you process payroll. If you pay employees weekly instead of biweekly, per-run pricing can quietly double your monthly cost compared to what the base fee suggests.

Here is a current 2026 pricing snapshot for the most popular options: Patriot Basic runs $17/month plus $4 per employee (self-file taxes), or $37/month plus $5 per employee for Full Service with automatic filing. OnPay runs $49/month plus $6 per employee with everything included. Gusto Simple runs $49/month plus $6 per employee, up from $40 before its 2026 price increase. Gusto Plus runs $80/month plus $12 per employee and adds multi-state support and next-day direct deposit. QuickBooks Workforce Payroll (the plan formerly called Payroll Core) is $50/month plus $6.50 per employee, after Intuit raised per-employee rates on 1 July 2026. Wave Payroll is $40/month plus $6 per active employee or contractor paid, unified across all 50 states since April 2025. ADP RUN uses custom quotes. All plans listed above (except Paychex) include unlimited payroll runs.

Most providers offer free trials. Patriot gives 30 days free. OnPay gives your first month free. Wave also offers a trial period. If you are evaluating multiple options, running a trial with real pay data is the most reliable way to test the software before you commit.

How to pay both W-2 employees and 1099 contractors

Many small businesses pay a mix of salaried or hourly employees and independent contractors. These two worker types require different tax handling. Employees get W-2 forms, and you withhold payroll taxes on their behalf. Contractors get 1099-NEC forms, and they handle their own taxes. Managing both in separate systems creates extra work and increases the chance of filing errors.

Gusto, OnPay, and QuickBooks Payroll all support both W-2 and 1099 workers in the same account. Gusto ranked number one on G2's 2026 Contractor Payments Index, and it added expanded global contractor payment support, which matters if you hire internationally. OnPay handles contractor payments at the same per-employee rate, so there is no penalty for mixing worker types.

When choosing a payroll platform that covers contractors, confirm that it generates and files 1099-NEC forms at year end, not just pay stubs. Some lower-cost tools process contractor payments but leave the 1099 filing to you manually. That workaround works but adds time and introduces filing risk at tax season.

Direct deposit speed: same-day, next-day, and 2-day options

Direct deposit speed is a practical consideration that most buyers overlook until they miss a payroll deadline. Standard direct deposit with most payroll platforms takes two business days, meaning you submit payroll on Wednesday to pay employees on Friday. If you miss that window, you are looking at next week.

Next-day direct deposit is now available on Gusto Plus and QuickBooks Premium plans. Same-day direct deposit is available on QuickBooks Workforce Elite. These faster options are not available on base-tier plans, so if payroll timing is tight for your business, factor in the plan upgrade cost when comparing prices.

For most small businesses with predictable payroll schedules, two-day direct deposit works fine as long as you build the submission deadline into your calendar. Where same-day and next-day options earn their cost is in businesses with variable schedules, last-minute hires, or owners who regularly cut payroll close to the deadline. Gusto's AutoPilot feature can automate recurring payroll runs entirely, which reduces the risk of missing a submission window.

State tax compliance: does your payroll software cover all 50 states?

Payroll tax rules vary significantly by state. Some states have no income tax. Others require local city-level withholding on top of state taxes. Multi-state employers face the most complexity, particularly when a remote employee lives in a different state than the company's home base.

All major payroll platforms, including Gusto, OnPay, QuickBooks, Patriot, and ADP RUN, file federal and state payroll taxes automatically. The distinction is in multi-state support. Gusto Simple covers single-state payroll. Gusto Plus adds multi-state filing starting at $80/month. ADP RUN includes multi-state capabilities in its custom plans. OnPay handles employees in all 50 states at no extra charge on its standard plan.

If you have remote employees in states where you do not already have a registered business presence, you may need to register as an employer in those states before you can legally run payroll there. Some payroll platforms, including Gusto and Rippling, now offer employer-of-record or state registration assistance as an add-on service. This matters most for businesses hiring their first remote employee outside their home state.

Before committing to a platform, confirm it covers every state where you have employees today and every state where you expect to hire in the next 12 months. Switching payroll platforms mid-year creates W-2 reconciliation work you want to avoid.

See also: best free payroll software, franchise payroll software for related options.

Frequently Asked Questions

What is the cheapest payroll software for a small business? Patriot Payroll Basic is the cheapest option at $17/month plus $4 per employee per month, and it includes unlimited payroll runs and direct deposit, but you file federal and state payroll taxes yourself at that tier [Patriot Software, 2026]; automatic tax filing requires the $37/month Full Service plan. It also comes with a 30-day free trial. For businesses with one to three employees, the Basic-tier monthly cost is typically under $30.

Is there free payroll software for small businesses? Truly free payroll software with tax filing is rare. Wave offers a free accounting tier, but Wave Payroll itself starts at $40/month plus $6/employee [Wave, 2026]. Homebase offers limited payroll features on a free plan, though full-service tax filing requires a paid tier. Most small businesses find that the cost of a paid platform, starting around $17-20/month, is worth it to avoid the liability of manual tax filing errors.

Can payroll software handle both W-2 employees and 1099 contractors? Yes. Gusto, OnPay, and QuickBooks Payroll all support both worker types in the same account. They process contractor payments and generate 1099-NEC forms at year end alongside employee W-2s. Confirm that any platform you choose files 1099s automatically rather than requiring you to generate them separately.

How long does direct deposit take with payroll software? Standard direct deposit takes two business days, meaning payroll submitted Wednesday arrives Friday. Next-day direct deposit is available on Gusto Plus and QuickBooks Premium plans. Same-day direct deposit is available on QuickBooks Elite. If your payroll schedule is predictable, two-day processing works for most small businesses as long as you submit by the cutoff.

Does payroll software automatically file federal and state taxes? Yes, all major paid payroll platforms, including Gusto, OnPay, Patriot, QuickBooks, and ADP RUN, handle automatic federal and state tax calculations, deposits, and filings. They also file quarterly forms like 941 and year-end W-2s. Some lower-cost tools handle calculations but leave filing to you, so confirm full-service filing is included before you sign up.

What is the difference between unlimited payroll runs and per-run pricing? Unlimited payroll runs means you can process payroll as often as you need, weekly, biweekly, or on-demand, at no extra charge. Per-run pricing charges a fee each time you run payroll. Paychex is the most widely cited example of per-run pricing. If you pay employees weekly, per-run fees can significantly increase your actual monthly cost compared to the advertised base price. Gusto, OnPay, Patriot, and QuickBooks all offer unlimited runs.

Why did Gusto raise its prices in 2026? Gusto increased the Simple plan from $40/month plus $6/employee to $49/month plus $6/employee in 2026, a roughly 23% jump on the base fee, with about a month's notice to existing customers. Gusto has not published a detailed public explanation beyond standard platform-investment language. The increase generated visible frustration among small business owners and accountants in payroll forums, with several describing plans to switch clients to ADP or Paychex over it [r/Payroll, 2026]. If you are price-sensitive, Patriot Full Service at $37/month plus $5/employee is the closest full-service alternative at a lower price point.

Is Patriot Payroll's per-employee fee $4 or $5? Both, depending on tier. The Basic plan is $17/month plus $4/employee and does not include automatic tax filing, so you calculate and remit taxes yourself. Full Service is $37/month plus $5/employee and includes automatic federal, state, and local tax filing. Most small businesses that want to avoid handling filings themselves should budget for Full Service, not Basic.

Does payroll software handle restaurant tip payouts automatically? It depends on the tool, not just the plan tier. OnPay includes native tip credit calculation and gratuity allocation across overlapping shifts in its standard price. Some scheduling-first tools require more manual reconciliation of tips against hours worked, which owners have described taking close to an hour per location per day when shifts overlap [r/smallbusiness, 2026]. If tip math is a daily pain point, confirm automated gratuity allocation before you commit, do not assume every payroll tool handles it the same way.

What to do next

Most payroll tools offer a free trial or free setup month. We recommend testing 2–3 options with a real payroll run before committing to an annual contract.

OZ

Owen Zhang

Editor · HRPay Pick

Owen focuses on pricing transparency, tax filing accuracy, and the hidden costs of switching providers. Every guide is checked against current vendor pricing pages and verified G2/Capterra buyer feedback before publication.